recipe extract_fullseq

extract_fullseq is part of BMTagger aka Best Match Tagger, for removing human reads from metagenomics datasets

Homepage:

ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/

License:

Public Domain

Recipe:

/extract_fullseq/meta.yaml

package extract_fullseq

(downloads) docker_extract_fullseq

versions:

3.101-43.101-33.101-23.101-1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install extract_fullseq

and update with::

   mamba update extract_fullseq

To create a new environment, run:

mamba create --name myenvname extract_fullseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/extract_fullseq:<tag>

(see `extract_fullseq/tags`_ for valid values for ``<tag>``)

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