recipe fastp

A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting…)

Homepage:

https://github.com/OpenGene/fastp

License:

MIT / MIT

Recipe:

/fastp/meta.yaml

package fastp

Versions:

0.23.4-1,  0.23.4-0,  0.23.3-0,  0.23.2-5,  0.23.2-4,  0.23.2-3,  0.23.2-2,  0.23.2-1,  0.23.2-0, 

0.23.4-1,  0.23.4-0,  0.23.3-0,  0.23.2-5,  0.23.2-4,  0.23.2-3,  0.23.2-2,  0.23.2-1,  0.23.2-0,  0.23.1-0,  0.23.0-0,  0.22.0-0,  0.20.1-1,  0.20.1-0,  0.20.0-0,  0.19.7-0,  0.19.6-0,  0.19.5-0,  0.19.4-0,  0.19.3-0,  0.18.0-0,  0.17.1-0,  0.17.0-0,  0.14.1-0,  0.13.1-0,  0.12.5-0,  0.12.4-0,  0.12.3-0,  0.12.2-1,  0.12.2-0

Depends:

• isa-l

• libdeflate >=1.18,<1.19.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

Required By:

• bactopia-qc

• titanomics

• ddocent

• proksee

• harpy

• harvest-variants

• lrtk

• zga

• mercat2

• tritimap

• crispector

• chewiesnake

• quantpi

• dadaist2

• mitoz

• metacerberus

• aquamis

• drax

• plassembler

• bttoxin_digger

• pgcgap

• dragonflye

• metagem

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fastp

and update with:

conda update fastp

or use the docker container:

docker pull quay.io/biocontainers/fastp:<tag>

(see fastp/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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