recipe fastq-screen

FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect

Homepage

http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/

License

GPLv3

Recipe

/fastq-screen/meta.yaml

package fastq-screen

(downloads) docker_fastq-screen

Versions

0.13.0-0, 0.11.3-1, 0.11.3-0, 0.11.1-1, 0.11.1-0, 0.5.2-1, 0.5.2-0

Depends bowtie

Depends bowtie2

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-gdgraph

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fastq-screen

and update with:

conda update fastq-screen

or use the docker container:

docker pull quay.io/biocontainers/fastq-screen:<tag>

(see fastq-screen/tags for valid values for <tag>)