recipe fastqc

A quality control tool for high throughput sequence data.

Homepage:

http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

License:

GPL >=3

Recipe:

/fastqc/meta.yaml

Links:

biotools: fastqc, usegalaxy-eu: fastqc

package fastqc

Versions:

0.12.1-0,  0.11.9-1,  0.11.9-0,  0.11.8-2,  0.11.8-1,  0.11.8-0,  0.11.7-7,  0.11.7-6,  0.11.7-5, 

0.12.1-0,  0.11.9-1,  0.11.9-0,  0.11.8-2,  0.11.8-1,  0.11.8-0,  0.11.7-7,  0.11.7-6,  0.11.7-5,  0.11.7-4,  0.11.7-2,  0.11.7-0,  0.11.6-2,  0.11.6-1,  0.11.6-0,  0.11.5-5,  0.11.5-4,  0.11.5-3,  0.11.5-2,  0.11.5-1,  0.11.4-2,  0.11.4-1,  0.11.4-0,  0.11.3-1,  0.11.3-0,  0.11.2-1,  0.11.2-0,  0.10.1-1,  0.10.1-0

Depends:

• font-ttf-dejavu-sans-mono

• fontconfig

• openjdk >=8.0.144

• perl

Required By:

• metawrap-mg

• cutqc

• cap-mirseq

• libis

• mercat2

• bactopia-qc

• qcumber

• asqcan

• r-dimsum

• microhapulator

• captus

• kneaddata

• uvp

• quantpi

• trnanalysis

• trim-galore

• illumina-cleanup

• riboraptor

• metacerberus

• kodoja

• minute

• transcriptm

• titanomics

• mockinbird

• bioexcel_seqqc

• drax

• mageck-vispr

• msi

• harvest-variants

• rpbp

• capcruncher

• secapr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fastqc

and update with:

conda update fastqc

or use the docker container:

docker pull quay.io/biocontainers/fastqc:<tag>

(see fastqc/tags for valid values for <tag>)

Download stats

Link to this page

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