recipe fastqc

A quality control tool for high throughput sequence data.

Homepage:

http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

License:

GPL >=3

Recipe:

/fastqc/meta.yaml

Links:

biotools: fastqc, usegalaxy-eu: fastqc

package fastqc

(downloads) docker_fastqc

versions:
0.12.1-0,  0.11.9-1,  0.11.9-0,  0.11.8-2,  0.11.8-1,  0.11.8-0,  0.11.7-7,  0.11.7-6,  0.11.7-5, 

0.12.1-0,  0.11.9-1,  0.11.9-0,  0.11.8-2,  0.11.8-1,  0.11.8-0,  0.11.7-7,  0.11.7-6,  0.11.7-5,  0.11.7-4,  0.11.7-2,  0.11.7-0,  0.11.6-2,  0.11.6-1,  0.11.6-0,  0.11.5-5,  0.11.5-4,  0.11.5-3,  0.11.5-2,  0.11.5-1,  0.11.4-2,  0.11.4-1,  0.11.4-0,  0.11.3-1,  0.11.3-0,  0.11.2-1,  0.11.2-0,  0.10.1-1,  0.10.1-0

depends font-ttf-dejavu-sans-mono:

depends fontconfig:

depends openjdk:

>=8.0.144

depends perl:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fastqc

and update with::

   mamba update fastqc

To create a new environment, run:

mamba create --name myenvname fastqc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fastqc:<tag>

(see `fastqc/tags`_ for valid values for ``<tag>``)

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Link to this page

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