recipe fasttree

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences

Homepage:

http://www.microbesonline.org/fasttree/

License:

GPL / GPL-2

Recipe:

/fasttree/meta.yaml

Links:

biotools: fasttree, doi: 10.1093/molbev/msp077

package fasttree

Versions:

2.1.11-1,  2.1.11-0,  2.1.10-6,  2.1.10-5,  2.1.10-4,  2.1.10-3,  2.1.10-2,  2.1.10-0,  2.1.9-2, 

2.1.11-1,  2.1.11-0,  2.1.10-6,  2.1.10-5,  2.1.10-4,  2.1.10-3,  2.1.10-2,  2.1.10-0,  2.1.9-2,  2.1.9-1,  2.1.9-0,  2.1.8-7,  2.1.8-6,  2.1.8-5,  2.1.8-4,  2.1.8-2,  2.1.8-1,  2.1.3-5,  2.1.3-4,  2.1.3-3,  2.1.3-2,  2.1.3-0

Depends:

• _openmp_mutex >=4.5

• libgcc-ng >=10.3.0

Required By:

• pantools

• phame

• nullarbor

• irma

• augur

• batch_brb

• antismash

• roary

• treesapp

• panacota

• bigscape

• phylophlan

• etoki

• pifcosm

• zorro

• dadaist2

• orthofinder

• genview

• panx

• wgdi

• gtdbtk

• amptk

• metachip

• pirate

• plant_tribes_gene_family_phylogeny_builder

• phylofisher

• graftm

• metawatt

• anvio

• ghost-tree

• parsnp

• arb-bio

• antismash-lite

• genometreetk

• lotus2

• gubbins

• gtotree

• genomics-data-index

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fasttree

and update with:

conda update fasttree

or use the docker container:

docker pull quay.io/biocontainers/fasttree:<tag>

(see fasttree/tags for valid values for <tag>)

Download stats

Link to this page

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