recipe fasttree

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences

Homepage

http://www.microbesonline.org/fasttree/

License

GPL v2

Recipe

/fasttree/meta.yaml

Links

biotools: fasttree, doi: 10.1093/molbev/msp077

package fasttree

Versions

2.1.10-6,  2.1.10-5,  2.1.10-4,  2.1.10-3,  2.1.10-2,  2.1.10-0,  2.1.9-2,  2.1.9-1,  2.1.9-0, 

2.1.10-6,  2.1.10-5,  2.1.10-4,  2.1.10-3,  2.1.10-2,  2.1.10-0,  2.1.9-2,  2.1.9-1,  2.1.9-0,  2.1.8-6,  2.1.8-5,  2.1.8-4,  2.1.8-2,  2.1.8-1,  2.1.3-4,  2.1.3-3,  2.1.3-2,  2.1.3-0

Depends

• _openmp_mutex >=4.5

• libgcc-ng >=9.4.0

Required By

• zorro

• amptk

• roary

• lotus2

• treesapp

• batch_brb

• gubbins

• irma

• phylophlan

• genometreetk

• nullarbor

• antismash

• ghost-tree

• pifcosm

• pirate

• metawatt

• panx

• gtdbtk

• arb-bio

• genview

• parsnp

• phame

• orthofinder

• augur

• dadaist2

• panacota

• metachip

• plant_tribes_gene_family_phylogeny_builder

• anvio

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fasttree

and update with:

conda update fasttree

or use the docker container:

docker pull quay.io/biocontainers/fasttree:<tag>

(see fasttree/tags for valid values for <tag>)

Download stats

Link to this page

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