recipe fasttree

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences

Homepage:

http://www.microbesonline.org/fasttree/

License:

GPL / GPL-2

Recipe:

/fasttree/meta.yaml

Links:

biotools: fasttree, doi: 10.1093/molbev/msp077

package fasttree

versions:

2.1.11-5,  2.1.11-4,  2.1.11-3,  2.1.11-2,  2.1.11-1,  2.1.11-0,  2.1.10-6,  2.1.10-5,  2.1.10-4, 

2.1.11-5,  2.1.11-4,  2.1.11-3,  2.1.11-2,  2.1.11-1,  2.1.11-0,  2.1.10-6,  2.1.10-5,  2.1.10-4,  2.1.10-3,  2.1.10-2,  2.1.10-0,  2.1.9-2,  2.1.9-1,  2.1.9-0,  2.1.8-9,  2.1.8-8,  2.1.8-7,  2.1.8-6,  2.1.8-5,  2.1.8-4,  2.1.8-2,  2.1.8-1,  2.1.3-7,  2.1.3-6,  2.1.3-5,  2.1.3-4,  2.1.3-3,  2.1.3-2,  2.1.3-0

depends _openmp_mutex:

>=4.5

depends libgcc:

>=13

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fasttree

and update with::

   mamba update fasttree

To create a new environment, run:

mamba create --name myenvname fasttree

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fasttree:<tag>

(see `fasttree/tags`_ for valid values for ``<tag>``)

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