recipe fasttree

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences

Homepage

http://www.microbesonline.org/fasttree/

License

GPL v2

Recipe

/fasttree/meta.yaml

Links

biotools: fasttree, doi: 10.1093/molbev/msp077

package fasttree

Versions

2.1.10-2, 2.1.10-0, 2.1.9-2, 2.1.9-1, 2.1.9-0, 2.1.8-4, 2.1.8-2, 2.1.8-1, 2.1.3-2, 2.1.3-0

Depends

• libgcc-ng >=4.9

Required By

• gubbins

• orthofinder

• arb-bio

• panx

• phame

• roary

• antismash

• zorro

• ghost-tree

• gtdbtk

• augur

• frogs

• metawatt

• nullarbor

• plant_tribes_gene_family_phylogeny_builder

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fasttree

and update with:

conda update fasttree

or use the docker container:

docker pull quay.io/biocontainers/fasttree:<tag>

(see fasttree/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/fasttree/README.html)