recipe fegenie

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes.

Homepage:

https://github.com/Arkadiy-Garber/FeGenie

License:

AGPL / AGPL-3.0

Recipe:

/fegenie/meta.yaml

Links:

doi: 10.3389/fmicb.2020.00037

package fegenie

Versions:

1.2-2,  1.2-1,  1.2-0,  1.1-2,  1.1-1,  1.1-0,  1.0-0

Depends:

• blast

• diamond

• hmmer

• metabat2

• prodigal

• python >=3.7

• r-argparse

• r-base 4.0.*

• r-broom

• r-ggdendro

• r-ggplot2

• r-ggpubr

• r-gridbase

• r-pvclust

• r-reshape

• r-reshape2

• r-stringi

• r-tidyverse

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fegenie

and update with:

conda update fegenie

or use the docker container:

docker pull quay.io/biocontainers/fegenie:<tag>

(see fegenie/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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