recipe figtree

FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures.

Homepage:

https://github.com/rambaut/figtree

License:

GPL / GPLv2

Recipe:

/figtree/meta.yaml

package figtree

(downloads) docker_figtree

Versions:

1.4.4-1,  1.4.4-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install figtree

and update with:

conda update figtree

or use the docker container:

docker pull quay.io/biocontainers/figtree:<tag>

(see figtree/tags for valid values for <tag>)

Notes

FigTree is Java program that comes with a custom wrapper shell script. This shell wrapper is called "figtree" and is on $PATH by default. By default "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with "figtree -Xms512m -Xmx1g"

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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