recipe footprint

This is a pipeline to find transcription factor footprints in ATAC-seq or DNase-seq data.

Homepage:

https://ohlerlab.mdc-berlin.de/software/Reproducible_footprinting_139/

License:

GPL-2.0-or-later

Recipe:

/footprint/meta.yaml

package footprint

Versions:

1.0.1-0,  1.0.0-2,  1.0.0-1,  1.0.0-0

Depends:

• bedtools 2.17.0

• bioconductor-genomicranges

• gawk

• perl >=5.32.1,<6.0a0 *_perl5

• r-base >=4.1,<4.2.0a0

• r-gtools

• r-mixtools

• r-segmented

• samtools 1.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install footprint

and update with:

conda update footprint

or use the docker container:

docker pull quay.io/biocontainers/footprint:<tag>

(see footprint/tags for valid values for <tag>)

Download stats

Link to this page

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