recipe funannotate

funannotate: eukaryotic genome annotation pipeline

Homepage:

https://github.com/nextgenusfs/funannotate

Documentation:

funannotate.readthedocs.io

License:

BSD / BSD-2-Clause

Recipe:

/funannotate/meta.yaml

package funannotate

Versions:

1.8.15-2,  1.8.15-1,  1.8.15-0,  1.8.13-0,  1.8.11-0,  1.8.9-3,  1.8.9-2,  1.8.9-1,  1.8.9-0, 

1.8.15-2,  1.8.15-1,  1.8.15-0,  1.8.13-0,  1.8.11-0,  1.8.9-3,  1.8.9-2,  1.8.9-1,  1.8.9-0,  1.8.7-0,  1.8.5-1,  1.8.5-0,  1.8.3-0,  1.8.1-1,  1.8.1-0,  1.7.4-1,  1.7.4-0,  1.7.3-0,  1.7.2-0,  1.7.1-1

Depends:

• augustus 3.5.0

• bamtools

• bedtools

• biopython

• blast

• codingquarry

• diamond >=2.1.6

• distro

• ete3

• evidencemodeler 1.1.1

• exonerate

• glimmerhmm

• goatools

• hisat2

• hmmer

• iqtree

• kallisto >=0.46.0,<0.46.2

• mafft >=7

• matplotlib-base <3.5

• minimap2

• natsort

• numpy

• pandas <2.0

• pasa >=2.4.1

• perl

• perl-clone

• perl-db-file

• perl-dbd-mysql

• perl-hash-merge

• perl-json

• perl-local-lib

• perl-logger-simple

• perl-math-utils

• perl-mce

• perl-parallel-forkmanager

• perl-scalar-util-numeric

• perl-soap-lite

• perl-text-soundex

• phyml

• pigz

• proteinortho >=6.0.16

• psutil

• python >=3.6,<3.9

• r-base >=3.4.1

• raxml

• requests

• salmon >=0.9

• samtools >=1.9

• scikit-learn

• scipy

• seaborn

• snap

• stringtie

• tantan

• tbl2asn

• trimal

• trimmomatic

• trinity >=2.8.5 h8b12597_5

• trnascan-se

• ucsc-pslcdnafilter

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install funannotate

and update with:

conda update funannotate

or use the docker container:

docker pull quay.io/biocontainers/funannotate:<tag>

(see funannotate/tags for valid values for <tag>)

Download stats

Link to this page

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