fusion-filter

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FusionFilter provides a common fusion-finding, filtering, and annotation framework for the Trinity Cancer Transcriptome Analysis Toolkit (CTAT).

Home https://github.com/FusionFilter/FusionFilter
Versions 0.5.0
License BSD-3-Clause
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/fusion-filter

FusionFilter provides a common fusion-finding, filtering, and annotation framework used by the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). This system is leveraged for preparing a target genome and annotation set for fusion transcript identification, fusion feature annotation, and integrates utilities for filtering likely false-positive fusions. - https://github.com/FusionFilter/FusionFilter/wiki

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install fusion-filter

and update with:

conda update fusion-filter

docker

A Docker container is available at https://quay.io/repository/biocontainers/fusion-filter.