recipe fusion-filter

FusionFilter provides a common fusion-finding, filtering, and annotation framework for the Trinity Cancer Transcriptome Analysis Toolkit (CTAT).

Homepage:

https://github.com/FusionFilter/FusionFilter

License:

BSD-3-Clause

Recipe:

/fusion-filter/meta.yaml

FusionFilter provides a common fusion-finding, filtering, and annotation framework used by the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). This system is leveraged for preparing a target genome and annotation set for fusion transcript identification, fusion feature annotation, and integrates utilities for filtering likely false-positive fusions. - https://github.com/FusionFilter/FusionFilter/wiki

package fusion-filter

Versions:

0.5.0-3,  0.5.0-2,  0.5.0-1,  0.5.0-0

Depends:

• blast >=2.7.1

• gmap >=2017.10.30

• perl

• perl-carp

• perl-db-file

• perl-json-xs

• perl-perlio-gzip

• perl-set-intervaltree

• perl-uri

• python <3

• samtools

• star >=2.5.4a

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install fusion-filter

and update with:

conda update fusion-filter

or use the docker container:

docker pull quay.io/biocontainers/fusion-filter:<tag>

(see fusion-filter/tags for valid values for <tag>)

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Link to this page

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