recipe gait-gm

GAIT-GM - Modeling Metabolites as a function of gene expression

Homepage:

https://github.com/secimTools/gait-gm

License:

MIT / MIT License

Recipe:

/gait-gm/meta.yaml

Modeling Metabolites as a function of gene expression

package gait-gm

versions:

21.7.22-0,  21.6.10-0

depends mygene:

depends python:

>=3.7

depends r-base:

depends r-caret:

depends r-mixomics:

depends secimtools:

>=21.6.3

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gait-gm

and update with::

   mamba update gait-gm

To create a new environment, run:

mamba create --name myenvname gait-gm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gait-gm:<tag>

(see `gait-gm/tags`_ for valid values for ``<tag>``)

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Link to this page

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