recipe garnet

GarNet uses gene expression and epigenetic data to impute transcription factors (TFs) that played an important role in a biological system.

Homepage

https://github.com/fraenkel-lab/GarNet

License

MIT / MIT

Recipe

/garnet/meta.yaml

package garnet

(downloads) docker_garnet

Versions

0.4.5-0, 0.4.3-0, 0.4.0-0, 0.2.20-0, 0.2.17-0

Depends intervaltree

Depends jinja2

Depends libgcc

Depends matplotlib

Depends numpy

Depends pandas

Depends python

3.5*

Depends statsmodels

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install garnet

and update with:

conda update garnet

or use the docker container:

docker pull quay.io/biocontainers/garnet:<tag>

(see garnet/tags for valid values for <tag>)