recipe gcta

GCTA (Genome-wide Complex Trait Analysis) estimates the proportion of phenotypic variance explained by all genome-wide SNPs for complex traits.

Homepage:

https://yanglab.westlake.edu.cn/software/gcta

License:

GPL-3.0-only

Recipe:

/gcta/meta.yaml

Links:

biotools: gcta, doi: 10.1016/j.ajhg.2010.11.011

package gcta

(downloads) docker_gcta

versions:

1.94.1-0,  1.93.2beta-1,  1.93.2beta-0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gcta

and update with::

   mamba update gcta

To create a new environment, run:

mamba create --name myenvname gcta

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gcta:<tag>

(see `gcta/tags`_ for valid values for ``<tag>``)

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Link to this page

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