recipe gdc-client

GDC Data Transfer Tool

Homepage:

https://gdc.cancer.gov/access-data/gdc-data-transfer-tool

Documentation:

https://docs.gdc.cancer.gov/Data_Transfer_Tool/Users_Guide/Getting_Started

Developer docs:

https://github.com/NCI-GDC/gdc-client

License:

APACHE / Apache-2.0

Recipe:

/gdc-client/meta.yaml

package gdc-client

versions:

2.3-0,  2.2-0,  2.1-0,  2.0-0,  1.6.1-0,  1.6.0-0,  1.5.0-0,  1.4.0-0,  1.3.0-3, 

2.3-0,  2.2-0,  2.1-0,  2.0-0,  1.6.1-0,  1.6.0-0,  1.5.0-0,  1.4.0-0,  1.3.0-3,  1.3.0-1,  1.3.0-0

depends cryptography:

>=2.8

depends importlib-metadata:

depends intervaltree:

>=3.0.2

depends jsonschema:

>=2.6

depends lxml:

>=4.4.2

depends ndg-httpsclient:

>=0.5.0,<1

depends progressbar2:

>=3.43.1

depends pyasn1:

>=0.4.3,<1

depends pyopenssl:

>=18,<19

depends python:

>=3.5

depends pyyaml:

>=5.1

depends requests:

>=2.22.0

depends termcolor:

>=1.1.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gdc-client

and update with::

   mamba update gdc-client

To create a new environment, run:

mamba create --name myenvname gdc-client

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gdc-client:<tag>

(see `gdc-client/tags`_ for valid values for ``<tag>``)

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