recipe genomedata

tools for accessing large amounts of genomic data

Homepage

http://genomedata.hoffmanlab.org/

License

GPL2

Recipe

/genomedata/meta.yaml

Links

biotools: genomedata, doi: 10.1093/bioinformatics/btq164

package genomedata

(downloads) docker_genomedata

Versions

1.4.4-3, 1.4.4-1, 1.4.4-0, 1.4.1-3, 1.4.1-2, 1.4.1-0, 1.4.0-1, 1.4.0-0, 1.3.6-0, 1.3.5-0

Depends bedtools

Depends hdf5

>=1.10.4,<1.10.5.0a0

Depends libgcc-ng

>=7.3.0

Depends path.py

Depends pytables

>=3.4.3

Depends python

>=2.7,<2.8.0a0

Depends six

Depends textinput

Depends ucsc-bigwigtobedgraph

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install genomedata

and update with:

conda update genomedata

or use the docker container:

docker pull quay.io/biocontainers/genomedata:<tag>

(see genomedata/tags for valid values for <tag>)