recipe genomelake

Simple and efficient random access to genomic data for deep learning models.

Homepage

https://github.com/kundajelab/genomelake

License

BSD / BSD License

Recipe

/genomelake/meta.yaml

Simple and efficient random access to genomic data for deep learning models.

package genomelake

(downloads) docker_genomelake

Versions

0.1.4-1, 0.1.4-0

Depends bcolz

>=1.1

Depends numpy

Depends pybedtools

Depends pybigwig

Depends pysam

Depends python

>=2.7,<2.8.0a0

Depends six

>=1.9.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install genomelake

and update with:

conda update genomelake

or use the docker container:

docker pull quay.io/biocontainers/genomelake:<tag>

(see genomelake/tags for valid values for <tag>)