recipe genometools-genometools

GenomeTools genome analysis system.

Homepage:

http://genometools.org/

Documentation:

http://genometools.org/documentation.html

Developer docs:

https://github.com/genometools/genometools

License:

BSD

Recipe:

/genometools-genometools/meta.yaml

Links:

doi: 10.1109/TCBB.2013.68

package genometools-genometools

(downloads) docker_genometools-genometools

versions:
1.6.5-0,  1.6.4-0,  1.6.3-0,  1.6.2-6,  1.6.2-4,  1.6.2-3,  1.6.2-2,  1.6.2-1,  1.6.2-0, 

1.6.5-0,  1.6.4-0,  1.6.3-0,  1.6.2-6,  1.6.2-4,  1.6.2-3,  1.6.2-2,  1.6.2-1,  1.6.2-0,  1.6.1-2,  1.6.1-1,  1.6.1-0,  1.6.0-0,  1.5.10-3,  1.5.10-2

depends cairo:

>=1.18.0,<2.0a0

depends font-ttf-dejavu-sans-mono:

depends fontconfig:

depends gettext:

depends libgcc-ng:

>=12

depends libglib:

>=2.78.0,<3.0a0

depends libstdcxx-ng:

>=12

depends pango:

>=1.50.14,<2.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends xorg-libsm:

depends xorg-libxext:

depends xorg-libxrender:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genometools-genometools

and update with::

   mamba update genometools-genometools

To create a new environment, run:

mamba create --name myenvname genometools-genometools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/genometools-genometools:<tag>

(see `genometools-genometools/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genometools-genometools/README.html)