recipe genomic_address_service

Genomic Address Service: De novo clustering and cluster address assignment

Homepage:

https://pypi.org/project/genomic-address-service

Developer docs:

https://github.com/phac-nml/genomic_address_service

License:

Apache-2.0

Recipe:

/genomic_address_service/meta.yaml

package genomic_address_service

versions:

0.1.1-1,  0.1.1-0

depends fastparquet:

>=2023.4.0

depends numba:

depends numpy:

depends pandas:

>=2.0.2

depends psutil:

depends pyarrow:

>=12.0.0

depends pytables:

>=3.8.0

depends python:

>=3.8,<4

depends scipy:

depends six:

>=1.16.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install genomic_address_service

and update with::

   mamba update genomic_address_service

To create a new environment, run:

mamba create --name myenvname genomic_address_service

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/genomic_address_service:<tag>

(see `genomic_address_service/tags`_ for valid values for ``<tag>``)

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Link to this page

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