recipe gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more.

Homepage:

http://ccb.jhu.edu/software/stringtie/gff.shtml

Developer docs:

https://github.com/gpertea/gffread

License:

MIT

Recipe:

/gffread/meta.yaml

Links:

biotools: gffread

package gffread

Versions:

0.12.7-3,  0.12.7-2,  0.12.7-1,  0.12.7-0,  0.12.1-1,  0.12.1-0,  0.11.7-0,  0.11.6-0,  0.11.4-0, 

0.12.7-3,  0.12.7-2,  0.12.7-1,  0.12.7-0,  0.12.1-1,  0.12.1-0,  0.11.7-0,  0.11.6-0,  0.11.4-0,  0.9.12-0,  0.9.9-1,  0.9.9-0,  0.9.8-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• zlib

Required By:

• bioconvert

• kmasker

• starseqr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gffread

and update with:

conda update gffread

or use the docker container:

docker pull quay.io/biocontainers/gffread:<tag>

(see gffread/tags for valid values for <tag>)

Download stats

Link to this page

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