recipe gimmemotifs

Motif prediction pipeline and various motif-related tools

Homepage:

https://github.com/vanheeringen-lab/gimmemotifs

License:

MIT

Recipe:

/gimmemotifs/meta.yaml

Links:

biotools: gimmemotifs

Motif prediction pipeline and various motif-related tools

package gimmemotifs

Versions:

0.18.0-0,  0.17.2-1,  0.17.2-0,  0.17.1-2,  0.17.1-1,  0.17.1-0,  0.17.0-2,  0.17.0-1,  0.17.0-0, 

0.18.0-0,  0.17.2-1,  0.17.2-0,  0.17.1-2,  0.17.1-1,  0.17.1-0,  0.17.0-2,  0.17.0-1,  0.17.0-0,  0.16.1-1,  0.16.1-0,  0.16.0-2,  0.16.0-0,  0.15.3-0,  0.15.2-0,  0.15.1-0,  0.15.0-1,  0.15.0-0,  0.14.4-2,  0.14.4-1,  0.14.4-0,  0.14.3-1,  0.14.3-0,  0.14.2-0,  0.14.1-2,  0.14.1-1,  0.14.1-0,  0.14.0-1,  0.14.0-0,  0.13.1-4,  0.13.1-3,  0.13.1-2,  0.13.1-1,  0.13.1-0,  0.13.0-1,  0.13.0-0,  0.12.0-1,  0.12.0-0,  0.11.1-1,  0.11.1-0,  0.10.0-0,  0.10.0b6-1,  0.10.0b5-1,  0.10.0b4-1,  0.10.0b4-0,  0.10.0b1-0,  0.9.0.6-0,  0.9.0.5-0,  0.9.0.4-0,  0.9.0.3-2,  0.8.9.1-1

Depends:

• dinamo >=1.0

• gadem >=1.3.1

• gimmemotifs-minimal 0.18.0.*

• homer >=4.11

• meme >=5.4.1

• prosampler >=1.0

• trawler >=2.0

• weeder >=2.0

• xxmotif >=1.6

Required By:

• scepia

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gimmemotifs

and update with:

conda update gimmemotifs

or use the docker container:

docker pull quay.io/biocontainers/gimmemotifs:<tag>

(see gimmemotifs/tags for valid values for <tag>)

package gimmemotifs-minimal

Versions:

0.18.0-0,  0.17.2-1,  0.17.2-0,  0.17.1-2

Depends:

• biofluff >=3.0.4

• configparser

• diskcache

• feather-format

• genomepy >=0.13.0

• iteround

• jinja2

• libgcc-ng >=12

• libstdcxx-ng >=12

• logomaker

• loguru

• matplotlib-base >=3.3

• numpy >=1.18

• pandas >=1.3.0

• pybedtools >=0.9.0

• pysam >=0.16

• python >=3.10,<3.11.0a0

• python-xxhash

• python_abi 3.10.* *_cp310

• qnorm >=0.8.1

• scikit-learn >=0.23.2

• scipy >=1.5

• seaborn >=0.10.1

• statsmodels

• tqdm >=4.46.1

• xdg

Required By:

• ananse

• gimmemotifs

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gimmemotifs-minimal

and update with:

conda update gimmemotifs-minimal

or use the docker container:

docker pull quay.io/biocontainers/gimmemotifs-minimal:<tag>

(see gimmemotifs-minimal/tags for valid values for <tag>)

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