- recipe gimmemotifs
Motif prediction pipeline and various motif-related tools
- Homepage:
- License:
MIT
- Recipe:
- Links:
biotools: gimmemotifs
Motif prediction pipeline and various motif-related tools
- package gimmemotifs¶
-
- Versions:
0.18.0-0
,0.17.2-1
,0.17.2-0
,0.17.1-2
,0.17.1-1
,0.17.1-0
,0.17.0-2
,0.17.0-1
,0.17.0-0
,0.18.0-0
,0.17.2-1
,0.17.2-0
,0.17.1-2
,0.17.1-1
,0.17.1-0
,0.17.0-2
,0.17.0-1
,0.17.0-0
,0.16.1-1
,0.16.1-0
,0.16.0-2
,0.16.0-0
,0.15.3-0
,0.15.2-0
,0.15.1-0
,0.15.0-1
,0.15.0-0
,0.14.4-2
,0.14.4-1
,0.14.4-0
,0.14.3-1
,0.14.3-0
,0.14.2-0
,0.14.1-2
,0.14.1-1
,0.14.1-0
,0.14.0-1
,0.14.0-0
,0.13.1-4
,0.13.1-3
,0.13.1-2
,0.13.1-1
,0.13.1-0
,0.13.0-1
,0.13.0-0
,0.12.0-1
,0.12.0-0
,0.11.1-1
,0.11.1-0
,0.10.0-0
,0.10.0b6-1
,0.10.0b5-1
,0.10.0b4-1
,0.10.0b4-0
,0.10.0b1-0
,0.9.0.6-0
,0.9.0.5-0
,0.9.0.4-0
,0.9.0.3-2
,0.8.9.1-1
- Depends:
dinamo
>=1.0
gadem
>=1.3.1
gimmemotifs-minimal
0.18.0.*
homer
>=4.11
meme
>=5.4.1
prosampler
>=1.0
trawler
>=2.0
weeder
>=2.0
xxmotif
>=1.6
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install gimmemotifs
and update with:
conda update gimmemotifs
or use the docker container:
docker pull quay.io/biocontainers/gimmemotifs:<tag>
(see gimmemotifs/tags for valid values for
<tag>
)
- package gimmemotifs-minimal¶
-
- Versions:
0.18.0-0
,0.17.2-1
,0.17.2-0
,0.17.1-2
- Depends:
biofluff
>=3.0.4
genomepy
>=0.13.0
libgcc-ng
>=12
libstdcxx-ng
>=12
matplotlib-base
>=3.3
numpy
>=1.18
pandas
>=1.3.0
pybedtools
>=0.9.0
pysam
>=0.16
python
>=3.10,<3.11.0a0
python_abi
3.10.* *_cp310
qnorm
>=0.8.1
scikit-learn
>=0.23.2
scipy
>=1.5
seaborn
>=0.10.1
tqdm
>=4.46.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install gimmemotifs-minimal
and update with:
conda update gimmemotifs-minimal
or use the docker container:
docker pull quay.io/biocontainers/gimmemotifs-minimal:<tag>
(see gimmemotifs-minimal/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/gimmemotifs/README.html)