- recipe gimmemotifs
Motif prediction pipeline and various motif-related tools
- Homepage:
- License:
MIT
- Recipe:
- Links:
biotools: gimmemotifs
Motif prediction pipeline and various motif-related tools
- package gimmemotifs¶
- versions:
0.18.0-4,0.18.0-2,0.18.0-1,0.18.0-0,0.17.2-1,0.17.2-0,0.17.1-2,0.17.1-1,0.17.1-0,0.18.0-4,0.18.0-2,0.18.0-1,0.18.0-0,0.17.2-1,0.17.2-0,0.17.1-2,0.17.1-1,0.17.1-0,0.17.0-2,0.17.0-1,0.17.0-0,0.16.1-1,0.16.1-0,0.16.0-2,0.16.0-0,0.15.3-0,0.15.2-0,0.15.1-0,0.15.0-1,0.15.0-0,0.14.4-2,0.14.4-1,0.14.4-0,0.14.3-1,0.14.3-0,0.14.2-0,0.14.1-2,0.14.1-1,0.14.1-0,0.14.0-1,0.14.0-0,0.13.1-4,0.13.1-3,0.13.1-2,0.13.1-1,0.13.1-0,0.13.0-1,0.13.0-0,0.12.0-1,0.12.0-0,0.11.1-1,0.11.1-0,0.10.0-0,0.10.0b6-1,0.10.0b5-1,0.10.0b4-1,0.10.0b4-0,0.10.0b1-0,0.9.0.6-0,0.9.0.5-0,0.9.0.4-0,0.9.0.3-2,0.8.9.1-1- depends dinamo:
>=1.0- depends gadem:
>=1.3.1- depends gimmemotifs-minimal:
0.18.0.*- depends homer:
>=4.11- depends meme:
>=5.4.1- depends prosampler:
>=1.0- depends trawler:
>=2.0- depends weeder:
>=2.0- depends xxmotif:
>=1.6- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install gimmemotifs and update with:: mamba update gimmemotifs
To create a new environment, run:
mamba create --name myenvname gimmemotifs
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/gimmemotifs:<tag> (see `gimmemotifs/tags`_ for valid values for ``<tag>``)
- package gimmemotifs-minimal¶
- versions:
0.18.0-4,0.18.0-2,0.18.0-1,0.18.0-0,0.17.2-1,0.17.2-0,0.17.1-2- depends biofluff:
>=3.0.4- depends configparser:
- depends diskcache:
- depends feather-format:
- depends genomepy:
>=0.13.0- depends iteround:
- depends jinja2:
- depends libgcc-ng:
>=12- depends libstdcxx-ng:
>=12- depends logomaker:
- depends loguru:
- depends matplotlib-base:
>=3.3- depends numpy:
>=1.18- depends pandas:
>=1.3,<2- depends pybedtools:
>=0.9.0- depends pysam:
>=0.16- depends python:
>=3.10,<3.11.0a0- depends python-xxhash:
- depends python_abi:
3.10.* *_cp310- depends qnorm:
>=0.8.1- depends scikit-learn:
>=0.23.2- depends scipy:
>=1.5- depends seaborn:
>=0.10.1- depends statsmodels:
- depends tqdm:
>=4.46.1- depends xdg:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install gimmemotifs-minimal and update with:: mamba update gimmemotifs-minimal
To create a new environment, run:
mamba create --name myenvname gimmemotifs-minimal
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/gimmemotifs-minimal:<tag> (see `gimmemotifs-minimal/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/gimmemotifs/README.html)
