recipe group_humann2_uniref_abundances_to_go

Group abundances of UniRef50 gene families obtained with HUMAnN2 to Gene Ontology (GO) slim terms with relative abundances

Homepage:

https://github.com/ASaiM/group_humann2_uniref_abundances_to_GO

License:

Apache 2

Recipe:

/group_humann2_uniref_abundances_to_go/meta.yaml

package group_humann2_uniref_abundances_to_go

(downloads) docker_group_humann2_uniref_abundances_to_go

versions:

1.3.0-0,  1.2.3-0,  1.2.1-0,  1.2.0-2,  1.2.0-1,  1.2.0-0

depends goatools:

depends humann2:

depends python:

<3

depends wget:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install group_humann2_uniref_abundances_to_go

and update with::

   mamba update group_humann2_uniref_abundances_to_go

To create a new environment, run:

mamba create --name myenvname group_humann2_uniref_abundances_to_go

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/group_humann2_uniref_abundances_to_go:<tag>

(see `group_humann2_uniref_abundances_to_go/tags`_ for valid values for ``<tag>``)

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