recipe gtdbtk

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Homepage

https://github.com/Ecogenomics/GTDBTk

License

GPL3 / GNU General Public v3 (GPLv3)

Recipe

/gtdbtk/meta.yaml

package gtdbtk

Versions

0.3.2-1, 0.3.2-0, 0.3.1-0, 0.3.0-1, 0.3.0-0, 0.2.2-0, 0.1.6-0, 0.1.5-0, 0.1.3-0

Depends

• dendropy >=4.1.0

• fastani

• fasttree

• future >=0.15.2

• hmmer

• pplacer

• prodigal

• python >=2.7,<2.8.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gtdbtk

and update with:

conda update gtdbtk

or use the docker container:

docker pull quay.io/biocontainers/gtdbtk:<tag>

(see gtdbtk/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gtdbtk/README.html)