recipe gtdbtk

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Homepage

https://github.com/Ecogenomics/GTDBTk

License

GPL3 / GNU General Public v3 (GPLv3)

Recipe

/gtdbtk/meta.yaml

Links

doi: 10.1093/bioinformatics/btz848

package gtdbtk

Versions

1.0.2-3, 1.0.2-2, 1.0.2-1, 1.0.2-0, 1.0.1-1, 1.0.1-0, 1.0.0-0, 0.3.3-0, 0.3.2-2, 0.3.2-1, 0.3.2-0, 0.3.1-0, 0.3.0-1, 0.3.0-0, 0.2.2-0, 0.1.6-0, 0.1.5-0, 0.1.3-0

Depends

• dendropy >=4.1.0

• fastani >=1.2

• fasttree >=2.1.9

• hmmer 3.1b2

• matplotlib-base

• numpy

• pplacer >=1.1.alpha17

• prodigal >=2.6.2

• python >=3.6

• scipy

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gtdbtk

and update with:

conda update gtdbtk

or use the docker container:

docker pull quay.io/biocontainers/gtdbtk:<tag>

(see gtdbtk/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gtdbtk/README.html)