recipe gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

Homepage

https://github.com/sanger-pathogens/gubbins

License

GPL-2.0

Recipe

/gubbins/meta.yaml

package gubbins

Versions

2.4.1-2,  2.4.1-1,  2.4.1-0,  2.4.0-0,  2.3.5-0,  2.3.4-2,  2.3.4-1,  2.3.4-0,  2.3.2-0, 

2.4.1-2,  2.4.1-1,  2.4.1-0,  2.4.0-0,  2.3.5-0,  2.3.4-2,  2.3.4-1,  2.3.4-0,  2.3.2-0,  2.3.1-2,  2.3.1-1,  2.3.1-0,  2.2.1-0

Depends

• biopython >=1.59

• dendropy >=4.0.2

• fasttree

• libgcc-ng >=9.3.0

• nose >=1.3

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• raxml

• reportlab >=3.0

• zlib >=1.2.11,<1.3.0a0

Required By

• pgcgap

• snpiphy

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install gubbins

and update with:

conda update gubbins

or use the docker container:

docker pull quay.io/biocontainers/gubbins:<tag>

(see gubbins/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gubbins/README.html)