- recipe gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
- Homepage:
- License:
GPL-2.0
- Recipe:
- package gubbins¶
-
- Versions:
3.3.0-0
,3.3-0
,3.2.1-1
,3.2.1-0
,3.2.0-1
,3.2.0-0
,3.1.6-1
,3.1.6-0
,3.1.5-0
,3.3.0-0
,3.3-0
,3.2.1-1
,3.2.1-0
,3.2.0-1
,3.2.0-0
,3.1.6-1
,3.1.6-0
,3.1.5-0
,3.1.4-0
,3.1.3-0
,3.1.2-0
,3.1.0-1
,3.1.0-0
,3.0.0-0
,2.4.1-2
,2.4.1-1
,2.4.1-0
,2.4.0-0
,2.3.5-0
,2.3.4-2
,2.3.4-1
,2.3.4-0
,2.3.2-0
,2.3.1-2
,2.3.1-1
,2.3.1-0
,2.2.1-0
- Depends:
biopython
>=1.59
dendropy
>=4.0.2
fasttree
2.1.10.*
iqtree
>=2.2
libgcc-ng
>=12
libzlib
>=1.2.13,<1.3.0a0
multiprocess
>=0.70
numba
>=0.56
numpy
>=1.2
numpy
>=1.23.0,<2.0a0
perl
>=5.32.1,<5.33.0a0 *_perl5
python
>=3.10,<3.11.0a0
python_abi
3.10.* *_cp310
raxml
8.2.12.*
raxml-ng
1.0.1.*
reportlab
>=3.0
scipy
>=1.5.3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install gubbins
and update with:
conda update gubbins
or use the docker container:
docker pull quay.io/biocontainers/gubbins:<tag>
(see gubbins/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/gubbins/README.html)