recipe guessmylt

Software to guess the RNA-Seq library type.

Homepage:

https://github.com/NBISweden/GUESSmyLT

License:

GPL / GPLv3

Recipe:

/guessmylt/meta.yaml

package guessmylt

versions:

0.2.5-0

depends bcbio-gff:

0.6.4

depends biopython:

1.67

depends bowtie2:

>=2

depends busco:

3.0.2

depends git:

>=2.11.1

depends pysam:

>=0.13.0

depends python:

>3

depends snakemake:

5.4.*

depends trinity:

2.8.4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install guessmylt

and update with::

   mamba update guessmylt

To create a new environment, run:

mamba create --name myenvname guessmylt

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/guessmylt:<tag>

(see `guessmylt/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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