- recipe hafez
A tool for identifying active prophage elements through read mapping
- Homepage:
- Documentation:
- Developer docs:
- License:
GPL3 / GPL-3.0-or-later
- Recipe:
- package hafez¶
- versions:
1.0.4-0,1.0.3-0,1.0.2-0- depends bbmap:
>=38.90- depends biopython:
>=1.78- depends blast:
>=2.5.0- depends hhsuite:
>=3.3.0- depends hmmer:
>=3.3.2- depends matplotlib-base:
>=3.3.4- depends minimap2:
>=2.18- depends mosdepth:
>=0.3.1- depends numpy:
>=1.20.1- depends pandas:
>=1.2.4- depends pyrodigal:
>=0.4.7- depends pysam:
>=0.16.0.1- depends python:
- depends sambamba:
>=0.6.8- depends samtools:
>=1.11- depends scipy:
>=1.6.2- depends seaborn:
>=0.11.1- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install hafez and update with:: mamba update hafez
To create a new environment, run:
mamba create --name myenvname hafez
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/hafez:<tag> (see `hafez/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hafez/README.html)
