recipe hapbin

hapbin is a collection of tools for efficiently calculating Extended Haplotype Homozygosity (EHH), the Integrated Haplotype Score (iHS) and the Cross Population Extended Haplotype Homozogysity (XP-EHH) statistic.






package hapbin

(downloads) docker_hapbin



depends _openmp_mutex:


depends libgcc-ng:


depends libstdcxx-ng:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hapbin

and update with::

   mamba update hapbin

To create a new environment, run:

mamba create --name myenvname hapbin

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `hapbin/tags`_ for valid values for ``<tag>``)

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