recipe haplotype-lso

Haplotype Candidatus Liberibacter solanacearum (Lso) samples from targeted amplicon capillary sequencing data

Homepage:

https://github.com/holtgrewe/haplotype-lso

License:

MIT / MIT

Recipe:

/haplotype-lso/meta.yaml

package haplotype-lso

Versions:

0.4.4-3,  0.4.4-2,  0.4.4-1,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.4-0, 

0.4.4-3,  0.4.4-2,  0.4.4-1,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.4-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.3.0-0

Depends:

• attrs

• bioconvert

• biopython >=1.75

• blast

• dash >=1.0

• dash-bootstrap-components

• dash-core-components

• dash-html-components

• dash-renderer

• dash-table

• flask

• logzero

• matplotlib-base

• numpy

• pandas

• plotly

• python

• scipy

• seqtk

• xlsxwriter

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install haplotype-lso

and update with:

conda update haplotype-lso

or use the docker container:

docker pull quay.io/biocontainers/haplotype-lso:<tag>

(see haplotype-lso/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/haplotype-lso/README.html)