recipe hatchet

Holistic Allele-specific Tumor Copy-number Heterogeneity

Homepage:

https://github.com/raphael-group/hatchet

License:

BSD-3

Recipe:

/hatchet/meta.yaml

HATCHet is an algorithm to infer allele and clone-specific copy-number aberrations (CNAs), clone proportions, and whole-genome duplications (WGD) for several tumor clones jointly from multiple bulk-tumor samples of the same patient or from a single bulk-tumor sample.

package hatchet

(downloads) docker_hatchet

Versions:
1.1.1-11.1.1-01.1.0-01.0.3-01.0.2-01.0.1-01.0.0-00.4.14-00.4.12-1

1.1.1-11.1.1-01.1.0-01.0.3-01.0.2-01.0.1-01.0.0-00.4.14-00.4.12-10.4.12-00.4.11-00.4.10-00.4.9-00.4.7-00.4.6-00.4.5-00.4.4-00.4.3-00.4.2-00.4.1-00.3.3-00.3.2-00.3.1-00.3.0-00.2.11-00.2.10-00.2.9-30.2.9-10.2.9-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hatchet

and update with:

conda update hatchet

or use the docker container:

docker pull quay.io/biocontainers/hatchet:<tag>

(see hatchet/tags for valid values for <tag>)

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