recipe hg-color

HG-CoLoR (Hybrid Graph for the error Correction of Long Reads) is a hybrid method for the error correction of long reads that follows the main idea from NaS to produce corrected long reads from assemblies of related accurate short reads.

Homepage:

https://github.com/pierre-morisse/HG-CoLoR

License:

GNU General Public License (GPL)

Recipe:

/hg-color/meta.yaml

package hg-color

versions:

1.1.1-1,  1.1.1-0,  1.0.0-3,  1.0.0-2,  1.0.0-1

depends coreutils:

depends emboss:

depends kmc:

depends libgcc-ng:

>=7.3.0

depends libstdcxx-ng:

>=7.3.0

depends parallel:

depends pgsa:

depends python:

depends quorum:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hg-color

and update with::

   mamba update hg-color

To create a new environment, run:

mamba create --name myenvname hg-color

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hg-color:<tag>

(see `hg-color/tags`_ for valid values for ``<tag>``)

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