recipe hisat2

graph-based alignment of next generation sequencing reads to a population of genomes

Homepage

https://ccb.jhu.edu/software/hisat2/index.shtml

License

GPLv3

Recipe

/hisat2/meta.yaml

Links

biotools: HISAT2, doi: 10.1038/nmeth.3317

package hisat2

Versions

2.1.0-4, 2.1.0-3, 2.1.0-2, 2.1.0-1, 2.1.0-0, 2.0.5-2, 2.0.5-1, 2.0.4-1, 2.0.4-0, 2.0.3beta-0, 2.0.2beta-0, 2.0.1beta-0, 2.0.0beta-0

Depends

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• perl

• python >=2.7,<2.8.0a0

Required By

• funannotate

• bismark

• piret

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hisat2

and update with:

conda update hisat2

or use the docker container:

docker pull quay.io/biocontainers/hisat2:<tag>

(see hisat2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hisat2/README.html)