- recipe hisat2
Graph-based alignment of next generation sequencing reads to a population of genomes.
- Homepage:
- Documentation:
- Developer docs:
- License:
GPL / GPL-3.0
- Recipe:
- Links:
biotools: HISAT2, doi: 10.1038/nmeth.3317, doi: 10.1038/s41587-019-0201-4, usegalaxy-eu: hisat2
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.
- package hisat2¶
-
- Versions:
2.2.1-6
,2.2.1-5
,2.2.1-4
,2.2.1-3
,2.2.1-2
,2.2.1-0
,2.2.0-4
,2.2.0-3
,2.2.0-2
,2.2.1-6
,2.2.1-5
,2.2.1-4
,2.2.1-3
,2.2.1-2
,2.2.1-0
,2.2.0-4
,2.2.0-3
,2.2.0-2
,2.2.0-1
,2.2.0-0
,2.1.0-4
,2.1.0-3
,2.1.0-2
,2.1.0-1
,2.1.0-0
,2.0.5-2
,2.0.5-1
,2.0.4-1
,2.0.4-0
,2.0.3beta-0
,2.0.2beta-0
,2.0.1beta-0
,2.0.0beta-0
- Depends:
libgcc-ng
>=12
libstdcxx-ng
>=12
python
>3.5
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install hisat2
and update with:
conda update hisat2
or use the docker container:
docker pull quay.io/biocontainers/hisat2:<tag>
(see hisat2/tags for valid values for
<tag>
)
Notes¶
Pre-built indices for HISAT2 can be downloaded from https://daehwankimlab.github.io/hisat2/download/.
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hisat2/README.html)