recipe hmftools-sage

SAGE is a somatic SNV, MNV and small INDEL caller optimised to call narrow regions of the genome with high prior chance of a variant with very high sensitivity.

Homepage

https://github.com/hartwigmedical/hmftools/tree/master/sage

License

GPL / GPL-3.0-only

Recipe

/hmftools-sage/meta.yaml

package hmftools-sage

(downloads) docker_hmftools-sage

Versions
2.8-02.7-12.7-02.6-02.5-02.4-02.3-02.2-22.2-1

2.8-02.7-12.7-02.6-02.5-02.4-02.3-02.2-22.2-12.2-01.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hmftools-sage

and update with:

conda update hmftools-sage

or use the docker container:

docker pull quay.io/biocontainers/hmftools-sage:<tag>

(see hmftools-sage/tags for valid values for <tag>)

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