recipe ice-cream

ICEcream: Integrative and Conjugative Elements Classification and gRaphical gEne Arrangement Method

Homepage:

https://github.com/xinehc/ICEcream

License:

MIT / MIT

Recipe:

/ice-cream/meta.yaml

package ice-cream

versions:

1.10-1,  1.10-0

depends aragorn:

depends biopython:

depends blast:

depends dna_features_viewer:

depends hmmer:

depends pandas:

depends perl:

>=5.26

depends prodigal:

depends prokka:

depends python:

>=3.6

depends r-base:

>=4.2

depends r-reshape2:

depends vmatch:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ice-cream

and update with::

   mamba update ice-cream

To create a new environment, run:

mamba create --name myenvname ice-cream

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ice-cream:<tag>

(see `ice-cream/tags`_ for valid values for ``<tag>``)

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