recipe icescreen

ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Bacillota genomes.

Homepage:

https://forgemia.inra.fr/ices_imes_analysis/icescreen

Documentation:

https://icescreen.migale.inrae.fr

License:

AGPL / AGPL-3.0-or-later

Recipe:

/icescreen/meta.yaml

package icescreen

versions:

1.3.2-0,  1.3.1-0,  1.2.0-0,  1.1.1-0,  1.1.0-0,  1.0.4-1,  1.0.4-0,  1.0.3-1,  1.0.3-0, 

1.3.2-0,  1.3.1-0,  1.2.0-0,  1.1.1-0,  1.1.0-0,  1.0.4-1,  1.0.4-0,  1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0

depends biopython:

1.83.*

depends blast:

2.15.*

depends hmmer:

3.4.*

depends pandas:

>=2.1.0

depends pyarrow:

depends python:

depends snakemake-minimal:

>=8.4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install icescreen

and update with::

   mamba update icescreen

To create a new environment, run:

mamba create --name myenvname icescreen

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/icescreen:<tag>

(see `icescreen/tags`_ for valid values for ``<tag>``)

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Link to this page

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