recipe icount

Computational pipeline for analysis of iCLIP data

Homepage:

https://github.com/tomazc/iCount

License:

MIT / MIT

Recipe:

/icount/meta.yaml

iCount is a Python module and associated command-line interface (CLI), which provides all the commands needed to process iCLIP data on protein-RNA interactions.

package icount

Versions:

2.0.0-1,  2.0.0-0

Depends:

• bedtools >=2.26.0

• cutadapt >=1.10

• matplotlib

• numpy

• numpydoc

• pandas

• pybedtools

• pysam

• python >=3

• sphinx >=1.4

• star

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install icount

and update with:

conda update icount

or use the docker container:

docker pull quay.io/biocontainers/icount:<tag>

(see icount/tags for valid values for <tag>)

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Link to this page

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