recipe idba

IDBA is a practical iterative De Bruijn Graph De Novo Assembler for sequence assembly in bioinformatics.

Homepage:

http://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/

License:

GPL2

Recipe:

/idba/meta.yaml

Links:

biotools: idba, doi: 10.1007/978-3-642-12683-3_28

package idba

(downloads) docker_idba

versions:

1.1.3-4,  1.1.3-3,  1.1.3-1,  1.1.3-0,  1.1.1-2,  1.1.1-1

depends libgcc:

>=13

depends libstdcxx:

>=13

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends python_abi:

3.11.* *_cp311

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install idba

and update with::

   mamba update idba

To create a new environment, run:

mamba create --name myenvname idba

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/idba:<tag>

(see `idba/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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