recipe igda-script

The wrapper script of iGDA to detect and phase minor SNVs from long-read sequencing data

Homepage:

https://github.com/zhixingfeng/shell

License:

GPL2

Recipe:

/igda-script/meta.yaml

package igda-script

(downloads) docker_igda-script

versions:

1.0.1-0

depends r-base:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install igda-script

and update with::

   mamba update igda-script

To create a new environment, run:

mamba create --name myenvname igda-script

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/igda-script:<tag>

(see `igda-script/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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