recipe integron_finder

Integron Finder aims at detecting integrons in DNA sequences

Homepage:

https://github.com/gem-pasteur/Integron_Finder/

Documentation:

https://integronfinder.readthedocs.io/en/latest/

License:

GPL3 / GPL-3.0-or-later

Recipe:

/integron_finder/meta.yaml

Links:

doi: 10.3390/microorganisms10040700

package integron_finder

versions:

2.0.5-0,  2.0.3-1,  2.0.3-0,  2.0.2-0,  2.0.1-0,  2.0-0,  2.0rc6-0

depends biopython:

>=1.82

depends colorlog:

depends hmmer:

>=3.1b2,<=3.3.2

depends infernal:

>=1.1.2,<=1.1.4

depends matplotlib-base:

>=3.8

depends numpy:

>=1.26

depends pandas:

>=2

depends prodigal:

>=2.6.3

depends python:

>=3.10

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install integron_finder

and update with::

   mamba update integron_finder

To create a new environment, run:

mamba create --name myenvname integron_finder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/integron_finder:<tag>

(see `integron_finder/tags`_ for valid values for ``<tag>``)

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