recipe isoseq3

Iso-Seq - Scalable De Novo Isoform Discovery

Homepage:

https://github.com/PacificBiosciences/pbbioconda

License:

BSD-3-Clause-Clear

Recipe:

/isoseq3/meta.yaml

package isoseq3

versions:

4.0.0-0,  3.8.2-0,  3.8.1-0,  3.8.0-0,  3.7.0-0,  3.4.0-0,  3.3.0-0,  3.2.2-0,  3.2.1-3, 

4.0.0-0,  3.8.2-0,  3.8.1-0,  3.8.0-0,  3.7.0-0,  3.4.0-0,  3.3.0-0,  3.2.2-0,  3.2.1-3,  3.2.1-2,  3.2.1-1,  3.2.1-0,  3.2.0-0,  3.1.2-0,  3.1.0-0,  3.0.0-2,  3.0.0-1,  3.0.0-0,  0.7.2-2,  0.7.2-1,  0.7.2-0

depends isoseq:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install isoseq3

and update with::

   mamba update isoseq3

To create a new environment, run:

mamba create --name myenvname isoseq3

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/isoseq3:<tag>

(see `isoseq3/tags`_ for valid values for ``<tag>``)

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