recipe itsx

ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi.

Homepage:

http://microbiology.se/software/itsx/

License:

GNU General Public License v3.0

Recipe:

/itsx/meta.yaml

package itsx

(downloads) docker_itsx

versions:

1.1.3-1,  1.1.3-0,  1.1.2-0,  1.1b-2,  1.1b-1,  1.1b-0

depends hmmer:

>=3.1b2

depends perl:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install itsx

and update with::

   mamba update itsx

To create a new environment, run:

mamba create --name myenvname itsx

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/itsx:<tag>

(see `itsx/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/itsx/README.html)