recipe itsx

ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi.

Homepage

http://microbiology.se/software/itsx/

License

GNU General Public License v3.0

Recipe

/itsx/meta.yaml

package itsx

(downloads) docker_itsx

Versions

1.1b-1, 1.1b-0

Depends hmmer

>=3.1b2

Depends perl

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install itsx

and update with:

conda update itsx

or use the docker container:

docker pull quay.io/biocontainers/itsx:<tag>

(see itsx/tags for valid values for <tag>)