Package Recipe 'itsxpress'

recipe itsxpress

ITSxpress: Software to rapidly trim the Internally Transcribed Spacer (ITS) region from FASTQ files

Homepage:: http://github.com/usda-ars-gbru/itsxpress
License:: PUBLIC-DOMAIN / CC0 1.0
Recipe:: /itsxpress/meta.yaml
Links:: biotools: ITSxpress, doi: 10.5281/zenodo.1304349, doi: 10.12688/f1000research.15704.1

package itsxpress¶

Versions:

1.8.0-2, 1.8.0-1, 1.8.0-0, 1.7.2-1, 1.7.2-0, 1.7.1-0, 1.6.4-0, 1.6.3-0, 1.6.1-1,

1.8.0-2, 1.8.0-1, 1.8.0-0, 1.7.2-1, 1.7.2-0, 1.7.1-0, 1.6.4-0, 1.6.3-0, 1.6.1-1, 1.6.1-0, 1.5.6-0

Depends:

bbmap
biopython >=1.60
hmmer >=3.1b2
pip
python >=3
vsearch 2.7.0.*

Required By:

dadaist2-full

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install itsxpress

and update with:

conda update itsxpress

or use the docker container:

docker pull quay.io/biocontainers/itsxpress:<tag>

(see itsxpress/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/itsxpress/README.html)