recipe itsxpress

ITSxpress: Software to rapidly trim the Internally Transcribed Spacer (ITS) region from FASTQ files

Homepage:

http://github.com/usda-ars-gbru/itsxpress

License:

PUBLIC-DOMAIN / CC0 1.0

Recipe:

/itsxpress/meta.yaml

Links:

biotools: ITSxpress, doi: 10.5281/zenodo.1304349, doi: 10.12688/f1000research.15704.1

package itsxpress

Versions:

1.8.0-2,  1.8.0-1,  1.8.0-0,  1.7.2-1,  1.7.2-0,  1.7.1-0,  1.6.4-0,  1.6.3-0,  1.6.1-1, 

1.8.0-2,  1.8.0-1,  1.8.0-0,  1.7.2-1,  1.7.2-0,  1.7.1-0,  1.6.4-0,  1.6.3-0,  1.6.1-1,  1.6.1-0,  1.5.6-0

Depends:

• bbmap

• biopython >=1.60

• hmmer >=3.1b2

• pip

• python >=3

• vsearch 2.7.0.*

Required By:

• dadaist2-full

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install itsxpress

and update with:

conda update itsxpress

or use the docker container:

docker pull quay.io/biocontainers/itsxpress:<tag>

(see itsxpress/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/itsxpress/README.html)