recipe jasmine

Jasmine: a Java pipeline for isomiR characterization in miRNA-Seq Data

Homepage:

https://bitbucket.org/bipous/jasmine/src/master

License:

GPL >=3

Recipe:

/jasmine/meta.yaml

package jasmine

(downloads) docker_jasmine

versions:

1.1-1,  1.1-0

depends openjdk:

>=8

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install jasmine

and update with::

   mamba update jasmine

To create a new environment, run:

mamba create --name myenvname jasmine

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/jasmine:<tag>

(see `jasmine/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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