kallisto

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Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

Home http://pachterlab.github.io/kallisto
Versions 0.45.0, 0.44.0, 0.43.1, 0.43.0, 0.42.4, 0.42.3
License BSD_2_Clause
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/kallisto
Links biotools: kallisto, doi: 10.1038/nbt.3519

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kallisto

and update with:

conda update kallisto

docker

A Docker container is available at https://quay.io/repository/biocontainers/kallisto.