recipe kallisto

Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

Homepage:http://pachterlab.github.io/kallisto
License:BSD_2_Clause
Recipe:/kallisto/meta.yaml
Links:biotools: kallisto, doi: 10.1038/nbt.3519
package kallisto

(downloads) docker_kallisto

Versions:

0.45.0-0, 0.44.0-2, 0.44.0-1, 0.43.1-1, 0.43.1-0, 0.43.0-2, 0.43.0-1, 0.42.4-2, 0.42.4-1, 0.42.3-1, 0.42.3-0

Depends:
  • hdf5 >=1.10.3,<1.10.4.0a0
  • zlib >=1.2.11,<1.3.0a0
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kallisto

and update with:

conda update kallisto

or use the docker container:

docker pull quay.io/biocontainers/kallisto:<tag>

(see kallisto/tags for valid values for <tag>)