recipe kallisto

Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

Homepage

http://pachterlab.github.io/kallisto

License

BSD_2_Clause

Recipe

/kallisto/meta.yaml

Links

biotools: kallisto, doi: 10.1038/nbt.3519

package kallisto

(downloads) docker_kallisto

Versions
0.46.2-10.46.2-00.46.1-00.46.0-10.46.0-00.45.1-00.45.0-00.44.0-20.44.0-1

0.46.2-10.46.2-00.46.1-00.46.0-10.46.0-00.45.1-00.45.0-00.44.0-20.44.0-10.43.1-10.43.1-00.43.0-20.43.0-10.42.4-20.42.4-10.42.3-10.42.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kallisto

and update with:

conda update kallisto

or use the docker container:

docker pull quay.io/biocontainers/kallisto:<tag>

(see kallisto/tags for valid values for <tag>)