recipe kaptive

Reports information about surface polysaccharide loci for Klebsiella pneumoniae species complex and Acinetobacter baumannii genome assemblies.

Homepage:

https://kaptive.readthedocs.io/en/latest

Developer docs:

https://github.com/klebgenomics/Kaptive

License:

GPL3 / GPL-3.0-or-later

Recipe:

/kaptive/meta.yaml

package kaptive

versions:

3.0.0b6-0,  3.0.0b5-0,  3.0.0b4-0,  3.0.0b1-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.0-0,  0.7.3-0, 

3.0.0b6-0,  3.0.0b5-0,  3.0.0b4-0,  3.0.0b1-0,  2.0.6-0,  2.0.5-0,  2.0.4-0,  2.0.0-0,  0.7.3-0,  0.7.2-0,  0.7.1-0,  0.7.0-0,  0.6.1-0,  0.6.0-0,  0.5.1-2,  0.5.1-0,  0.3-0,  0.2-0

depends biopython:

>=1.83

depends dna_features_viewer:

depends minimap2:

depends python:

>=3.9

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kaptive

and update with::

   mamba update kaptive

To create a new environment, run:

mamba create --name myenvname kaptive

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kaptive:<tag>

(see `kaptive/tags`_ for valid values for ``<tag>``)

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