- recipe kb-python
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing.
- Homepage:
- Documentation:
- License:
BSD / BSD-2-Clause
- Recipe:
- Links:
- package kb-python¶
- versions:
0.29.1-0,0.28.2-2,0.28.2-1,0.28.2-0,0.28.1-0,0.28.0-0,0.27.3-1,0.27.3-0,0.27.2-0,0.29.1-0,0.28.2-2,0.28.2-1,0.28.2-0,0.28.1-0,0.28.0-0,0.27.3-1,0.27.3-0,0.27.2-0,0.27.1-0,0.27.0-0,0.26.4-0,0.26.3-0,0.26.2-0,0.26.1-0,0.26.0-0,0.25.1-0,0.25.0-0,0.24.4-0- depends anndata:
>=0.9.2- depends biopython:
>=1.8- depends h5py:
>=2.10.0- depends jinja2:
>2.10.1- depends loompy:
>=3.0.6- depends nbconvert:
>=5.6.0- depends nbformat:
>=4.4.0- depends ngs-tools:
>=1.8.6- depends numpy:
>=1.17.2- depends pandas:
>=1.5.3- depends plotly:
>=4.5.0- depends python:
>=3.8- depends requests:
>=2.22.0- depends scanpy:
>=1.4.4.post1- depends scikit-learn:
>=0.21.3- depends tqdm:
>=4.39.0- depends typing-extensions:
>=3.7.4- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install kb-python and update with:: mamba update kb-python
To create a new environment, run:
mamba create --name myenvname kb-python
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/kb-python:<tag> (see `kb-python/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/kb-python/README.html)
