recipe khmer

khmer k-mer counting library

Homepage:

https://khmer.readthedocs.io/

Developer docs:

https://github.com/dib-lab/khmer

License:

BSD / BSD License

Recipe:

/khmer/meta.yaml

Links:

biotools: khmer, doi: 10.12688/f1000research.6924.1

package khmer

Versions:

3.0.0a3-3,  3.0.0a3-2,  3.0.0a3-1,  3.0.0a3-0,  3.0.0a2-1,  3.0.0a2-0,  3.0.0a1-0,  2.1.2-0,  2.1-0, 

3.0.0a3-3,  3.0.0a3-2,  3.0.0a3-1,  3.0.0a3-0,  3.0.0a2-1,  3.0.0a2-0,  3.0.0a1-0,  2.1.2-0,  2.1-0,  2.1rc1-0,  2.0-2,  2.0-1,  2.0-0

Depends:

• _openmp_mutex >=4.5

• bz2file

• bzip2 >=1.0.8,<2.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• screed >=1.0

• zlib >=1.2.11,<1.3.0a0

Required By:

• cmash

• dammit

• pathogist

• kwip

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install khmer

and update with:

conda update khmer

or use the docker container:

docker pull quay.io/biocontainers/khmer:<tag>

(see khmer/tags for valid values for <tag>)

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