recipe kmc

K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects.

Homepage:http://sun.aei.polsl.pl/kmc/
License:GPLv2
Recipe:/kmc/meta.yaml
Links:biotools: KMC, doi: 10.1093/bioinformatics/btx304
package kmc

(downloads) docker_kmc

Versions:

3.1.1rc1-0, 3.1.0-0, 3.0.1-2, 3.0.1-1, 3.0.1-0, 3.0.0-1, 3.0.0-0, 2.3.0-3, 2.3.0-2, 2.3.0-1
Depends:
  • bzip2 >=1.0.6,<2.0a0
  • libgcc-ng >=7.2.0
  • libstdcxx-ng >=7.2.0
  • zlib >=1.2.11,<1.3.0a0
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kmc

and update with:

conda update kmc

or use the docker container:

docker pull quay.io/biocontainers/kmc:<tag>

(see kmc/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kmc/README.html)