recipe kmc

Tools for efficient k-mer counting and filtering of reads based on k-mer content

Homepage

http://sun.aei.polsl.pl/kmc/

License

GPL3 / GPL3

Recipe

/kmc/meta.yaml

Links

biotools: KMC, doi: 10.1093/bioinformatics/btx304

K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects.

package kmc

Versions

3.1.2rc1-0,  3.1.1-1,  3.1.1-0,  3.1.1rc1-2,  3.1.1rc1-1,  3.1.1rc1-0,  3.1.0-0,  3.0.1-2,  3.0.1-1, 

3.1.2rc1-0,  3.1.1-1,  3.1.1-0,  3.1.1rc1-2,  3.1.1rc1-1,  3.1.1rc1-0,  3.1.0-0,  3.0.1-2,  3.0.1-1,  3.0.1-0,  3.0.0-2,  3.0.0-1,  3.0.0-0,  2.3.0-3,  2.3.0-2,  2.3.0-1

Depends

• bzip2 >=1.0.8,<2.0a0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• zlib >=1.2.11,<1.3.0a0

Required By

• shovill

• rkp

• saffrontree

• iva

• hg-color

• kounta

• malva

• seroba

• pantools

• metalign

• plasmidtron

• hypo

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kmc

and update with:

conda update kmc

or use the docker container:

docker pull quay.io/biocontainers/kmc:<tag>

(see kmc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kmc/README.html)