recipe kmc

Tools for efficient k-mer counting and filtering of reads based on k-mer content

Homepage

http://sun.aei.polsl.pl/kmc/

License

GPL3 / GPL3

Recipe

/kmc/meta.yaml

Links

biotools: KMC, doi: 10.1093/bioinformatics/btx304

K-mer Counter is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of reads from genome sequencing projects.

package kmc

(downloads) docker_kmc

Versions
3.1.2rc1-03.1.1-13.1.1-03.1.1rc1-23.1.1rc1-13.1.1rc1-03.1.0-03.0.1-23.0.1-1

3.1.2rc1-03.1.1-13.1.1-03.1.1rc1-23.1.1rc1-13.1.1rc1-03.1.0-03.0.1-23.0.1-13.0.1-03.0.0-23.0.0-13.0.0-02.3.0-32.3.0-22.3.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kmc

and update with:

conda update kmc

or use the docker container:

docker pull quay.io/biocontainers/kmc:<tag>

(see kmc/tags for valid values for <tag>)