- recipe kmc
Tools for efficient k-mer counting and filtering of reads based on k-mer content.
- Homepage:
- License:
GPL / GPL-3
- Recipe:
KMC is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of DNA sequences. KMC tools allow performing various operations on k-mers sets.
- package kmc¶
-
- Versions:
3.2.1-2
,3.2.1-1
,3.2.1-0
,3.1.2rc1-0
,3.1.1-1
,3.1.1-0
,3.1.1rc1-2
,3.1.1rc1-1
,3.1.1rc1-0
,3.2.1-2
,3.2.1-1
,3.2.1-0
,3.1.2rc1-0
,3.1.1-1
,3.1.1-0
,3.1.1rc1-2
,3.1.1rc1-1
,3.1.1rc1-0
,3.1.0-0
,3.0.1-2
,3.0.1-1
,3.0.1-0
,3.0.0-3
,3.0.0-2
,3.0.0-1
,3.0.0-0
,2.3.0-3
,2.3.0-2
,2.3.0-1
- Depends:
bzip2
>=1.0.8,<2.0a0
libgcc-ng
>=10.3.0
libstdcxx-ng
>=10.3.0
libzlib
>=1.2.11,<1.3.0a0
zlib
>=1.2.11,<1.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install kmc
and update with:
conda update kmc
or use the docker container:
docker pull quay.io/biocontainers/kmc:<tag>
(see kmc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/kmc/README.html)