recipe kmc

Tools for efficient k-mer counting and filtering of reads based on k-mer content.

Homepage:

https://github.com/refresh-bio/kmc

License:

GPL / GPL-3

Recipe:

/kmc/meta.yaml

KMC is a utility designed for counting k-mers (sequences of consecutive k symbols) in a set of DNA sequences. KMC tools allow performing various operations on k-mers sets.

package kmc

Versions:

3.2.1-2,  3.2.1-1,  3.2.1-0,  3.1.2rc1-0,  3.1.1-1,  3.1.1-0,  3.1.1rc1-2,  3.1.1rc1-1,  3.1.1rc1-0, 

3.2.1-2,  3.2.1-1,  3.2.1-0,  3.1.2rc1-0,  3.1.1-1,  3.1.1-0,  3.1.1rc1-2,  3.1.1rc1-1,  3.1.1rc1-0,  3.1.0-0,  3.0.1-2,  3.0.1-1,  3.0.1-0,  3.0.0-3,  3.0.0-2,  3.0.0-1,  3.0.0-0,  2.3.0-3,  2.3.0-2,  2.3.0-1

Depends:

• bzip2 >=1.0.8,<2.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By:

• seroba

• plasmidtron

• dragonflye

• chewiesnake

• kounta

• saffrontree

• tb-profiler

• shovill-se

• hypo

• pathogen-profiler

• hg-color

• metalign

• ntm-profiler

• malva

• shovill

• rkp

• iva

• aquamis

• pantools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kmc

and update with:

conda update kmc

or use the docker container:

docker pull quay.io/biocontainers/kmc:<tag>

(see kmc/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kmc/README.html)