recipe kmer-jellyfish

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence

Homepage

http://www.genome.umd.edu/jellyfish.html

Developer docs

https://github.com/gmarcais/Jellyfish

License

GPL / GPL-3.0

Recipe

/kmer-jellyfish/meta.yaml

Links

biotools: jellyfish, doi: 10.1093/bioinformatics/btr011

package kmer-jellyfish

(downloads) docker_kmer-jellyfish

Versions

2.3.0-12.3.0-01.1.12-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kmer-jellyfish

and update with:

conda update kmer-jellyfish

or use the docker container:

docker pull quay.io/biocontainers/kmer-jellyfish:<tag>

(see kmer-jellyfish/tags for valid values for <tag>)