- recipe kneaddata
KneadData is a tool designed to perform quality control on metagenomic sequencing data.
MIT / MIT
KneadData is a tool designed to perform quality control on metagenomic sequencing data, especially data from microbiome experiments. In these experiments, samples are typically taken from a host in hopes of learning something about the microbial community on the host. However, metagenomic sequencing data from such experiments will often contain a high ratio of host to bacterial reads. This tool aims to perform principled in silico separation of bacterial reads from these "contaminant" reads, be they from the host, from bacterial 16S sequences, or other user-defined sources.
- package kneaddata¶
- Required By:
With an activated Bioconda channel (see set-up-channels), install with:
conda install kneaddata
and update with:
conda update kneaddata
or use the docker container:
docker pull quay.io/biocontainers/kneaddata:<tag>
(see kneaddata/tags for valid values for
Link to this page¶
Render an badge with the following MarkDown:
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kneaddata/README.html)