recipe kodoja

Kodoja: identifying viruses from plant RNA sequencing data

Homepage:

https://github.com/abaizan/kodoja/

License:

MIT

Recipe:

/kodoja/meta.yaml

package kodoja

versions:

0.0.10-0,  0.0.9-0,  0.0.8-0,  0.0.7-0,  0.0.6-0,  0.0.5-0,  0.0.4-0,  0.0.3-1,  0.0.3-0, 

0.0.10-0,  0.0.9-0,  0.0.8-0,  0.0.7-0,  0.0.6-0,  0.0.5-0,  0.0.4-0,  0.0.3-1,  0.0.3-0,  0.0.2-0

depends biopython:

depends fastqc:

depends kaiju:

depends kraken:

depends ncbi-genome-download:

depends numpy:

depends pandas:

depends python:

depends trimmomatic:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kodoja

and update with::

   mamba update kodoja

To create a new environment, run:

mamba create --name myenvname kodoja

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kodoja:<tag>

(see `kodoja/tags`_ for valid values for ``<tag>``)

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