recipe kodoja

Kodoja: identifying viruses from plant RNA sequencing data

Homepage

https://github.com/abaizan/kodoja/

License

MIT

Recipe

/kodoja/meta.yaml

package kodoja

(downloads) docker_kodoja

Versions

0.0.9-0, 0.0.8-0, 0.0.7-0, 0.0.6-0, 0.0.5-0, 0.0.4-0, 0.0.3-1, 0.0.3-0, 0.0.2-0

Depends biopython

Depends fastqc

Depends kaiju

Depends kraken

Depends ncbi-genome-download

Depends numpy

Depends pandas

Depends python

Depends trimmomatic

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kodoja

and update with:

conda update kodoja

or use the docker container:

docker pull quay.io/biocontainers/kodoja:<tag>

(see kodoja/tags for valid values for <tag>)