recipe kraken

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.

Homepage

http://ccb.jhu.edu/software/kraken/

License

GPLv3

Recipe

/kraken/meta.yaml

Links

biotools: kraken, doi: 10.1186/gb-2014-15-3-r46

package kraken

Versions

1.1.1-4, 1.1.1-3, 1.1.1-2, 1.1.1-0, 1.1-2, 1.1-1, 1.1-0, 1.0-0, 0.10.6_eaf8fb68-4, 0.10.6_eaf8fb68-3, 0.10.6_eaf8fb68-2, 0.10.6_eaf8fb68-1, 0.10.6_eaf8fb68-0, 0.10.5beta-2, 0.10.5beta-0

Depends

• kmer-jellyfish 1.*

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• perl >=5.26.2,<5.26.3.0a0

• rsync

• tar

• wget

Required By

• metawrap

• kodoja

• sequana

• uvp

• qcumber

• nullarbor

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kraken

and update with:

conda update kraken

or use the docker container:

docker pull quay.io/biocontainers/kraken:<tag>

(see kraken/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kraken/README.html)