-
recipe
kraken
¶ Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
- Homepage
- License
GPLv3
- Recipe
- Links
biotools: kraken, doi: 10.1186/gb-2014-15-3-r46
-
package
kraken
¶ -
- Versions
1.1.1-3, 1.1.1-2, 1.1.1-0, 1.1-2, 1.1-1, 1.1-0, 1.0-0, 0.10.6_eaf8fb68-4, 0.10.6_eaf8fb68-3, 0.10.6_eaf8fb68-2, 0.10.6_eaf8fb68-1, 0.10.6_eaf8fb68-0, 0.10.5beta-2, 0.10.5beta-0
- Depends
kmer-jellyfish 1.*
libgcc-ng >=7.3.0
libstdcxx-ng >=7.3.0
perl >=5.26.2,<5.26.3.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install kraken
and update with:
conda update kraken
or use the docker container:
docker pull quay.io/biocontainers/kraken:<tag>
(see kraken/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/kraken/README.html)